2024

Udeshi ND, Xu C, Jiang Z, Gao SM, Yin Q, Luo W, Carr SA, Davis MM, and Li J (2024).
Cell-surface milieu remodeling in human dendritic cell activation
Journal of Immunology, in press. [ PubMed | PDF | Janelia News ]

Xu C, Li Z, Lyu C, Hu Y, McLaughlin CN, Wong KKL, Xie Q, Luginbuhl DJ, Li H, Udeshi ND, Svinkina T, Mani DR, Han S, Li T, Li Y, Guajardo R, Ting AY, Carr SA, Li J, and Luo L (2024).
Molecular and Cellular Mechanisms of Teneurin Signaling in Synaptic Partner Matching
Cell, in press. [ PubMed | PDF | Janelia News ]

Peng X, Clements J, Jiang Z, Han S, Preibisch S, and Li J (2024).
PEELing: an integrated and user-centric platform for spatially-resolved proteomics data analysis
bioRxiv, 537871. [ bioRxiv | PDF | PEELing Web | PEELing Python | Janelia News ]

2023

Gao F, Mallajoysula V, Arunachalam PS, van der Ploeg K, Manohar M, Röltgen K, Yang F, Wirz O, Hoh R, Haraguchi E, Lee JY, Willis R, Ramachandiran V, Li J, Kathuria KR, Li C, Lee AS, Shah MM, Sindher SB, Gonzalez J, Altman JD, Wang TT, Boyd SD, Pulendran B, Jagannathan P, Nadeau KC, and Davis MM (2023).
Spheromers reveal robust T cell responses to the Pfizer/BioNTech vaccine and attenuated peripheral CD8+ T cell responses post SARS-CoV-2 infection
Immunity, 56(4), 864-878. [ PubMed | PDF ]

2022

Shuster SA, Li J, Chon U, Sinantha-Hu MC, Luginbuhl DJ, Udeshi ND, Carey DK, Takeo YH, Xie Q, Xu C, Mani DR, Han S, Ting AY, Carr SA, and Luo L (2022).
In situ cell-type-specific cell-surface proteomic profiling in mice
Neuron, 110(23), 3882-3896. [ PubMed | PDF | Stanford News ]

Xie Q, Li J, Li H, Udeshi ND, Svinkina T, Orlin D, Kohani S, Guajardo R, Mani DR, Xu C, Li T, Han S, Wei W, Shuster SA, Luginbuhl DJ, Quake SR, Murthy SE, Ting AY, Carr SA, and Luo L (2022).
Transcription Factor Acj6 Controls Dendrite Targeting via A Combinatorial Cell-Surface Code
Neuron, 110(14), 2299-2314. [ PubMed | PDF | Neuron Preview | Stanford News ]

Li J, Zaslavsky M, Su Y, Guo J, Sikora MJ, van Unen V, Christophersen A, Chiou SH, Chen L, Li J, Ji X, Wilhelmy J, McSween AM, Palanski BA, Mallajosyula VVA, Bracey NA, Dhondalay GKR, Bhamidipati K, Pai J, Kipp LB, Dunn JE, Hauser SL, Oksenberg JR, Satpathy AT, Robinson WH, Dekker CL, Steinmetz LM, Khosla C, Utz PJ, Sollid LM, Chien YH, Heath JR, Fernandez-Becker NQ, Nadeau KC, Saligrama N, and Davis MM (2022).
KIR+CD8+ T cells suppress pathogenic T cells and are active in autoimmune diseases and COVID-19
Science, 376 (6590). [ PubMed | PDF ]

Li H, Janssens J, De Waegeneer M, Kolluru SS, Davie K, Gardeux V, Saelens W, David FPA, Brbić M, Spanier K, Leskovec J, McLaughlin CN, Xie Q, Jones RC, Brueckner K, Shim J, Tattikota SG, Schnorrer F, Rust K, Nystul TG, Carvalho-Santos Z, Ribeiro C, Pal S, Mahadevaraju S, Przytycka TM, Allen AM, Goodwin SF, Berry CW, Fuller MT, White-Cooper H, Matunis EL, DiNardo S, Galenza A, O'Brien LE, Dow JAT, FCA Consortium, Jasper H, Oliver B, Perrimon N, Deplancke B, Quake SR, Luo L, and Aerts S (2022).
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Science, 375 (6584). [ PubMed | PDF ]

2021

McLaughlin CN, Brbic M, Xie Q, Li T, Horns F, Kolluru SS, Kebschull JM, Vacek D, Xie A, Li J, Jones RC, Leskovec J, Quake SR, Luo L, and Li H (2021).
Single-cell transcriptomes of developing and adult olfactory receptor neurons in Drosophila
eLife, 10, e63856. [ PubMed | PDF ]

Xie Q, Brbic M, Horns F, Kolluru SS, Jones RC, Li J, Reddy A, Xie A, Kohani S, Li Z, McLaughlin CN, Li T, Xu C, Vacek D, Luginbuhl DJ, Leskovec J, Quake SR, Luo L, and Li H (2021).
Temporal evolution of single-cell transcriptomes of Drosophila olfactory projection neurons
eLife, 10, e63450. [ PubMed | PDF ]

2020

Li J and Luo L (2020).
Nurturing Undergraduate Researchers in Biomedical Sciences
Cell, 182(1), 1-4. [ PubMed | PDF ]

Li J, Han S, Li H, Udeshi ND, Svinkina T, Mani DR, Xu C, Guajardo R, Xie Q, Li T, Luginbuhl DJ, Wu B, McLaughlin CN, Xie A, Kaewsapsak P, Quake SR, Carr SA, Ting AY, and Luo L (2020).
Cell-Surface Proteomic Profiling in the Fly Brain Uncovers Wiring Regulators
Cell, 180(2), 373-386. [ PubMed | PDF | HHMI News | Stanford News | Faculty Opinions ]

Li H, Li T, Horns F, Li J, Xie Q, Xu C, Wu B, Kebschull JM, McLaughlin CN, Kolluru SS, Jones RC, Vacek D, Xie A, Luginbuhl DJ, Quake SR, and Luo L (2020).
Single-Cell Transcriptomes Reveal Diverse Regulatory Strategies for Olfactory Receptor Expression and Axon Targeting
Current Biology, 30(7), 1189-1198. [ PubMed | PDF ]

2019

Xie Q, Wu B, Li J, Xu C, Li H, Luginbuhl DJ, Wang X, Ward A, and Luo L (2019).
Transsynaptic Fish-lips signaling prevents misconnections between nonsynaptic partner olfactory neurons
Proceedings of the National Academy of Sciences, 116(32), 16068-16073. [ PubMed | PDF ]

Guajardo R, Luginbuhl DJ, Han S, Luo L, and Li J (2019).
Functional divergence of Plexin B structural motifs in distinct steps of Drosophila olfactory circuit assembly
eLife, 8, e48594. [ PubMed | PDF ]

2018

Li H, Shuster SA, Li J, and Luo L (2018).
Linking neuronal lineage and wiring specificity
Neural development, 13(1), 5. [ PubMed | PDF ]

Li J, Guajardo R, Xu C, Wu B, Li H, Li T, Luginbuhl DJ, Xie X, and Luo L (2018).
Stepwise wiring of the Drosophila olfactory map requires specific Plexin B levels
eLife, 7, e39088. [ PubMed | PDF ]

Han S, Li J, and Ting AY (2018).
Proximity labeling: spatially resolved proteomic mapping for neurobiology
Current opinion in neurobiology, 50, 17-23. [ PubMed | PDF ]

2017

Li H, Horns F, Wu B, Xie Q, Li J, Li T, Luginbuhl DJ, Quake SR, and Luo L (2017).
Classifying Drosophila olfactory projection neuron subtypes by single-cell RNA sequencing
Cell, 171(5), 1206-1220. [ PubMed | PDF ]

Li J and Luo L (2017).
A bitter–sweet symphony
Nature, 548(7667), 285. [ PubMed | PDF ]

Wu B, Li J, Chou YH, Luginbuhl D, and Luo L (2017).
Fibroblast growth factor signaling instructs ensheathing glia wrapping of Drosophila olfactory glomeruli
Proceedings of the National Academy of Sciences, 114(29), 7505-7512. [ PubMed | PDF ]

Dufault-Thompson K, Jian H, Cheng R, Li J, Wang F, and Zhang Y (2017).
A genome-scale model of Shewanella piezotolerans simulates mechanisms of metabolic diversity and energy conservation
mSystems, 2(2), e00165-16. [ PubMed | PDF ]

2016

Li J, Zhang W, Guo Z, Wu S, Jan LY, and Jan YN (2016).
A defensive kicking behavior in response to mechanical stimuli mediated by Drosophila wing margin bristles
Journal of Neuroscience, 36(44), 11275-11282. [ PubMed | PDF | PNAS Journal Club ]

Guo Y, Wang Y, Zhang W, Meltzer S, Zanini D, Yu Y, Li J, Cheng T, Guo Z, Wang Q, Jacobs JS, Sharma Y, Eberl DF, Göpfert MC, Jan, LY, Jan YN, and Wang Z (2016).
Transmembrane channel-like (tmc) gene regulates Drosophila larval locomotion
Proceedings of the National Academy of Sciences, 113(26), 7243-7248. [ PubMed | PDF ]

2015

Zhang W, Cheng LE, Kittelmann M, Li J, Petkovic M, Cheng T, Jin P, Guo Z, Göpfert MC, Jan LY, and Jan YN (2015).
Ankyrin repeats convey force to gate the NOMPC mechanotransduction channel
Cell, 162(6), 1391-1403. [ PubMed | PDF ]

Gao XJ, Riabinina O, Li J, Potter CJ, Clandinin TR, and Luo L (2015).
A transcriptional reporter of intracellular Ca2+ in Drosophila
Nature neuroscience, 18(6), 917. [ PubMed | PDF ]

Ma Y, Nie H, Chen H, Li J, Hong Y, Wang B, Wang C, Zhang J, Cao W, Zhang M, Xu Y, Ding X, Yin SK, Qu X, and Ying W (2015).
NAD+/NADH metabolism and NAD+-dependent enzymes in cell death and ischemic brain injury: current advances and therapeutic implications
Current medicinal chemistry, 22(10), 1239-1247. [ PubMed ]

2014

Li S, Hsu DD, Li B, Luo X, Alderson N, Qiao L, Ma L, Zhu HH, He Z, Suino-Powell K, Ji K, Li J, Shao J, Xu HE, Li T, and Feng GS (2014).
Cytoplasmic tyrosine phosphatase Shp2 coordinates hepatic regulation of bile acid and FGF15/19 signaling to repress bile acid synthesis
Cell metabolism, 20(2), 320-332. [ PubMed | PDF ]